2024

Naheed Tabassum, Hanin Ibrahim Ahmed, Sabiha Parween, Arsheed H. Sheikh, Maged M. Saad,
Simon G. Krattinger, and Heribert Hirt

Host genotype, soil composition, and geo‑climatic factors shape the fonio seed microbiome

Houda Henchiri, Naganand Rayapura , Hanna M. Alhoraibi, Jose Caius, Christine Paysant-Le Roux, Sylvie Citerne, Heribert Hirt, Jean Colcombet, Bénédicte Sturbois, and Jean Bigeard

Integrated multi-omics and genetic analyses reveal molecular determinants underlying Arabidopsis snap33
mutant phenotype

2023

Anna Siodmak, Federico Martinez-Seidel, Naganand Rayapuram, Jeremie Bazin, Hanna Alhoraibi, Dione Gentry-Torfer, Naheed Tabassum, Arsheed H. Sheikh, José Kenyi González Kise, Ikram Blilou, Martin Crespi, Joachim Kopka and Heribert Hirt

Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana

Wil Prall, Arsheed H. Sheikh, Jeremie Bazin, Jean Bigeard, Marilia Almeida-Trapp, Martin Crespi, Heribert Hirt, and Brian D. Gregory

Pathogen-induced m6A dynamics affect plant immunity

Neus Garcias-Bonet, Anna Roik, Braden Tierney, Francisca C. García, Helena D.M. Villela, Ashley M. Dungan, Kate M. Quigley, Michael Sweet, Gabriele Berg, Lone Gram, David G. Bourne, Blake Ushijima, Maggie Sogin, Lone Hoj, Gustavo Duarte, Heribert Hirt, Kornelia Smalla, Alexandre S. Rosado, Susana Carvalho, Rebecca Vega Thurber, Maren Ziegler, Christopher E. Mason, Madeleine J.H. van Oppen, Christian R. Voolstra, and Raquel S. Peixoto

Horizon scanning the application of probiotics for wildlife

Heribert Hirt, Hassan Boukcim, Marc Ducousso, and Maged M. Saad

Engineering carbon sequestration on arid lands

Guoxin Cui, Migle K. Konciute, Lorraine Ling, Luke Esau, Jean-Baptiste Raina, Baoda Han, Octavio R. Salazar, Jason S. Presnell, Nils Rädecker, Huawen Zhong, Jessica Menzies, Phillip A. Cleves, Yi Jin Liew, Cory J. Krediet, Val Sawiccy, Maha J. Cziesielski, Paul Guagliardo, Jeremy Bougoure, Mathieu Pernice, Heribert Hirt, Christian R. Voolstra, Virginia M. Weis, John R. Pringle, Manuel Aranda

Molecular insights into the Darwin paradox of coral reefs from the sea anemone Aiptasia

Anna Siodmak , Umar F. Shahul Hameed, Naganand Rayapuram, Ronny Volz, Marie Boudsocq, Siba Alharbi, Hannah Alhoraibi, Yong-Hwan Lee, Ikram Blilou,
Stefan T. Arold and Heribert Hirt

Essential role of the CD docking motif of MPK4 in plant immunity, growth, and development

Guotai Yu, Oadi Matny, Spyridon Gourdoupis,
Naganand Rayapuram , Fatimah R. Aljedaani , Yan L. Wang, Thorsten Nürnberger, Ryan Johnson, Emma E. Crean , Isabel M.-L. Saur, Catherine Gardener, Yajuan Yue, Ngonidzashe Kangara, Burkhard Steuernagel, Sadiye Hayta, Mark Smedley, Wendy Harwood , Mehran Patpour, Shuangye Wu, Jesse Poland , Jonathan D. G. Jones , T. Lynne Reuber, Moshe Ronen, Amir Sharon, Matthew N. Rouse, Steven Xu, Kateřina Holušová, Jan Bartoš, István Molnár, Miroslava Karafiátová , Heribert Hirt, Ikram Blilou, Łukasz Jaremko, Jaroslav Doležel, Brian J. Steffenson  & Brande B. H. Wulff

The wheat stem rust resistance gene Sr43 encodes an unusual protein kinase

Arsheed H. Sheikh, Kashif Nawaz, Naheed Tabassum, Marilia Almeida-Trapp, Kiruthiga G. Mariappan, Hanna Alhoraibi, Naganand Rayapuram, Manuel Aranda,
Martin Groth and Heribert Hirt

Linker histone H1 modulates defense priming and immunity in plants

Heribert Hirt, Salim Al-Babili, Marilia Almeida-Trapp, Martin Antoine, Manuel Aranda,
Dorothea Bartels, Malcolm Bennett, Ikram Blilou, Damian Boer, Alix Boulouis, Chris Bowler,
Sophie Brunel-Muguet, Fabien Chardon, Jean Colcombet, Vincent Colot,
Agata Daszkowska-Golec, Jose R. Dinneny, Ben Field, Katja Froehlich, Catherine H. Gardener,
Alain Gojon, Eric Gomès, Eva María Gómez Álvarez, Crisanto Gutierrez, Michel Havaux,
Scott Hayes, Edith Heard, Michael Hodges, Amal Khalaf Alghamdi, Laurent Laplaze,
Kyle J. Lauersen, Nathalie Leonhard, Xenie Johnson, Jonathan Jones, Hannes Kollist,
Stanislav Kopriva, Anne Krapp, Mauricio Lopez-Portillo Masson, Matthew F. McCabe,
Livia Merendino, Antonio Molina, Jose L. Moreno Ramirez, Bernd Müller-Röber, Michaël Nicolas,
Ido Nir, Izamar Olivas Orduna, José Pardo-Tomás, Jean-Philippe Reichheld,
Pedro Luis Rodriguez Egea, Hatem Rouached, Maged M. Saad, Peter Schlögelhofer, Kirti A. Singh,
Ive De Smet, Clara Stanschewski, Alice Stra, Mark Tester, Catherine Walshe, Andreas P.M. Weber,
Detlef Weigel, Philip Wigge, Michael Wrzaczek, Brande Wulff, and Iain M. Young

PlantACT! – how to tackle the climate crisis

Anamika A. Rawat, Michael Hartmann, Anne Harzen, Raphael Lugan, Sara Christina Stolze,
Celine Forzani, Laura Abts, Sophie Reißenweber, Naganand Rayapuram, Hirofumi Nakagami,
Jürgen Zeier, and Heribert Hirt

OXIDATIVE SIGNAL-INDUCIBLE1 induces immunity by coordinating N-hydroxypipecolic acid, salicylic acid, and camalexin synthesis

2022

Aala A. Abulfaraj, Hanna M. Alhoraibi, Kiruthiga Mariappan, Jean Bigeard, Huoming Zhang, Marilia Almeida-Trapp, Olga Artyukh, Fatimah Abdulhakim, Sabiha Parween , Delphine Pflieger, Ikram Blilou, Heribert Hirt  and
Naganand Rayapuram

Analysis of the Arabidopsis coilin mutant reveals a positive role of AtCOILIN in plant immunity

Tiffany Yip Delormel, Liliana Avila-Ospina, Marl`ene Davanture, Michel Zivy, Julien Lang, Nicolas Valentin, Naganand Rayapuram, Heribert Hirt, Jean Colcombet, Marie Boudsocq

In vivo identification of putative CPK5 substrates in Arabidopsis thaliana

Eleonora Rolli, Axel de Zélicourt ,Hanin Alzubaidy, Michael Karampelias, Sabiha Parween, Naganand Rayapuram, Baoda Han, Katja Froehlich, Aala A. Abulfaraj, Hanna Alhoraibi, Kiruthiga Mariappan, Cristina Andrés-Barrao , Jean Colcombet and Heribert Hirt

The Lys-motif receptor LYK4 mediates Enterobacter sp. SA187 triggered salt tolerance in Arabidopsis thaliana

Ronny Völz, William Harris, Heribert Hirt & Yong-Hwan Lee

ROS homeostasis mediated by MPK4 and SUMM2
determines synergid cell death

2021

Naganand Rayapurama, Mai Jarada, Hanna M. Alhoraibic, Jean Bigeardd, Aala A. Abulfarajf,
Ronny Völzg, Kiruthiga Gayathri Mariappana, Marilia Almeida-Trappa,h, Maria Schlöffeli, Emmanuelle Lastruccij, Ludovic Bonhommek, Andrea A. Gusti, Axel Mithöferh, Stefan T. Aroldl, Delphine Pflieger, and Heribert Hirt

Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity

Aala A. Abulfaraj, Heribert Hirt and Naganand Rayapuram

G3BPs in Plant Stress

Ying Huang, Sanchari Sicar, Juan S. Ramirez-Prado, Deborah Manza-Mianza, Javier Antunez-Sanchez, Rim Brik-Chaouche, Natalia Y. Rodriguez-Granados,
Jing An, Catherine Bergounioux, Magdy M. Mahfouz, Heribert Hirt, Martin Crespi, Lorenzo Concia, Fredy Barneche, Simon Amiard, Aline V. Probst, Jose Gutierrez-Marcos, Federico Ariel, Cécile Raynaud, David Latrasse and Moussa Benhamed

Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis

Lukas Synek, Anamika Rawat, Floriane L’Haridon, Laure Weisskopf, Maged M. Saad and Heribert Hirt

Multiple strategies of plant colonization by beneficial
endophytic Enterobacter sp. SA187

Kirti Shekhawat, Maged M Saad, Arsheed Sheikh, Kiruthiga Mariappan, Henda Al-Mahmoudi, Fatimah Abdulhakim, Abdul Aziz Eida, Rewaa Jalal, Khaled Masmoudi & Heribert Hirt

Root endophyte induced plant thermotolerance by constitutive chromatin modification at heat stress memory gene loci

Cristina Andrées-Barraoa, Hanin Alzubaidy, Rewaa Jalala, Kiruthiga G. Mariappana, Axel de Zélicourta,
Ameerah Bokharia, Olga Artyukha, Khairiah Alwutayda, Anamika Rawata, Kirti Shekhawata, Marília Almeida-Trappa, Maged M. Saada and Heribert Hirt

Coordinated bacterial and plant sulfur metabolism in Enterobacter sp. SA187–induced plant salt stress tolerance

Pierre Jacob, Gwilherm Brisou, Marion Dalmais, Johanne Thévenin, Froukje van der Wal, David Latrasse, Ravi Suresh Devani, Moussa Benhamed, Bertrand Dubreucq, Adnane Boualem, Loic Lepiniec, Richard G. H. Immink, Heribert Hirt and Abdelhafid Bendahmane

The Seed Development Factors TT2 and MYB5 Regulate Heat Stress Response in Arabidopsis

2020

Baoda Han, 2 Yunhe Jiang, Guoxin Cui, Jianing Mi, M. Rob G. Roelfsema, Grégory Mouille, Julien Sechet, Salim Al-Babili, Manuel Aranda and Heribert Hirt

CATION-CHLORIDE CO-TRANSPORTER 1 (CCC1) Mediates Plant Resistance against Pseudomonas syringae

Soonkap Kim1,2,†, Sophie J. M. Piquerez1,3,†, Juan S. Ramirez-Prado, Emmanouil Mastorakis, Alaguraj Veluchamy, David Latrasse, Deborah Manza-Mianza,
Rim Brik-Chaouche, Ying Huang, Natalia Y. Rodriguez-Granados, Lorenzo Concia, Thomas Blein, Sylvie Citerne, Abdelhafid Bendahmane, Catherine Bergounioux,
Martin Crespi, Magdy M. Mahfouz , Cécile Raynaud, Heribert Hirt, Vardis Ntoukakis  and Moussa Benhamed

GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5’ and 3’ ends of its target genes

Lorenzo Concia1, Alaguraj Veluchamy2, Juan S. Ramirez-Prado1, Azahara Martin-Ramirez3, Ying Huang1,
Magali Perez, Severine Domenichini, Natalia Y. Rodriguez Granados, Soonkap Kim, Thomas Blein,
Susan Duncan, Clement Pichot, Deborah Manza-Mianza, Caroline Juery, Etienne Paux, Graham Moore,
Heribert Hirt, Catherine Bergounioux, Martin Crespi, Magdy M. Mahfouz, Abdelhafid Bendahmane,
Chang Liu, Anthony Hall, Cécile Raynaud, David Latrasse and Moussa Benhamed

Wheat chromatin architecture is organized in genome territories and transcription factories

Cécile Sözen, Sebastian T. Schenk, Marie Boudsocq, Camille Chardin, Marilia Almeida-Trapp, Anne Krapp,
Heribert Hirt, Axel Mithöfer, and Jean Colcombet

Wounding and Insect Feeding Trigger Two Independent MAPK Pathways with Distinct Regulation and Kinetics

Older Publications

Axel de ZeÂlicourt, Lukas Synek, Maged M. Saad, Hanin Alzubaidy, Rewaa Jalal, Yakun Xie, Cristina AndreÂs-Barrao, Eleonora Rolli, Florence Guerard, Kiruthiga G. Mariappan, Ihsanullah Daur, Jean Colcombet, Moussa Benhamed, Thomas Depaepe, Dominique Van Der Straeten, Heribert Hirt

Ethylene induced plant stress tolerance by Enterobacter sp. SA187 is mediated by 2-keto- 4-methylthiobutyric acid production

Cristina Andrés-Barrao, Feras F. Lafi, Intikhab Alam, Axel de Zélicourt, Abdul A. Eida, Ameerah Bokhari, Hanin Alzubaidy, Vladimir B. Bajic, Heribert Hirt and Maged M. Saad

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium

Sajid Mahmood, IhsanullahDaur, SamirG.Al-Solaimani, ShakeelAhmad, Mohamed H.Madkour, MuhammadYasir, HeribertHirt, ShawkatAli and ZahirAli

Plant Growth Promoting Rhizobacteria and Silicon Synergistically Enhance Salinity Tolerance of Mung Bean

Ameerah Bokhari, Magbubah Essack, Feras F. Lafi, Cristina Andres-Barrao, Rewaa Jalal, Soha Alamoudi, Rozaimi Razal, Hanin Alzubaidy, Kausar H. Shah, Shahid Siddique, Vladimir B. Bajic, Heribert Hirt & Maged M.

SaadBioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance.

Inès Beaugelin, Anne Chevalier, Stefano D’Alessandro, Brigitte Ksas, Ondřrej Novák, Miroslav Strnad, Céline Forzani, Heribert Hirt, Michel Havaux, and Fabien Monnet.

OXI1 and DAD Regulate Light-Induced Cell Death Antagonistically through Jasmonate and Salicylate Levels.

Ghofran Othoum1, Salim Bougouffa, Ameerah Bokhari, Feras F. Lafi, Takashi Gojobori, Heribert Hirt, Ivan Mijakovic, Vladimir B. Bajic1 and Magbubah Essack

Mining biosynthetic gene clusters in Virgibacillus genomes.

Juan S. Ramirez-Prado, Aala A. Abulfaraj, Naganand Rayapuram, Moussa Benhamed, and Heribert Hirt

Plant Immunity: From Signaling to Epigenetic Control of Defense.

Ronny Völz, Soon-Kap Kim1, Jianing Mi, Anamika A. RawatID, Alaguraj Veluchamy, Kiruthiga G. Mariappan, Naganand Rayapuram, Jean-Michel Daviere, Patrick Achard, Ikram Blilou, Salim Al-Babili, Moussa Benhamed, Heribert Hirt
INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plantgrowth in Arabidopsis thaliana.

Ronny Völz, Soon-Kap Kim, Jianing Mi, Kiruthiga G. MariappanID, Xiujie Guo, Jean Bigeard, Santiago Alejandro, Delphine Pflieger, Naganand Rayapuram, Salim Al-Babili, Heribert Hirt
The Trihelix transcription factor GT2-like 1(GTL1) promotes salicylic acid metabolism, and regulates bacterial-triggered immunity.

Andreasson E, Jenkins T, Brodersen P, Thorgrimsen S, Petersen NH, Zhu S, Qiu JL, Micheelsen P, Rocher A, Petersen M, Newman MA, Bjorn Nielsen H, Hirt H, Somssich I, Mattsson O, Mundy J. (2005)
The MAP kinase substrate MKS1 is a regulator of plant defense responses.

EMBO J. 14 , 2579-89.

Brader, G., Djamei, A., Teige, M., Palva, T. Hirt, H. (2007)
The MAP kinase kinase MKK2 affects diseasse resistance in Arabidopsis.

Mol. Plant Micr. Int. 20, 589-596.

Schweighofer, A., Kazanaviciute, V., Scheikl, E., Teige, M., Doczi, R., Hirt, H., Schwanninger, M., Kant, M., Schuurink, R., Mauch, F., Buchala, A., Cardinale, F., and Meskiene I. (2007)
The PP2C-Type Phosphatase AP2C1 Negatively Regulates MPK4 and MPK6 and Modulates Innate Immunity and Jasmonic Acid and Ethylene Levels in Arabidopsis.

Plant Cell 7, 2213-24.

Kemmerling, B., Schwedt, A., Rodriguez, P., Mazzotta, S., Frank, M., Abu Qamar, S., Mengiste, T., Betsuyaku, S., Parker, J.E., Müssig, K., Thomma, B.P.H.J., Albrecht, C., de Vries, S., Hirt, H., and Nürnberger T. (2007)
The BRI1-Associated Kinase 1, BAK1, Has a Brassinolide-Independent Role in Plant Cell-Death Control.

Current Biol. 17, 1116–1122

Camehl I, Drzewiecki C, Vadassery J, Shahollari B, Sherameti I, Forzani C, Munnik T, Hirt H, Oelmüller R. (2011)
The OXI1 Kinase Pathway Mediates Piriformospora indica-Induced Growth Promotion in Arabidopsis.

PLoS Pathog. 7:e1002051.

Schikora A, Virlogeux-Payant I, Bueso E, Garcia AV, Nilau T, Charrier A, Pelletier S, Menanteau P, Baccarini M, Velge P, Hirt H. (2011)
Conservation of Salmonella infection mechanisms in plants and animals.

PLoS One. 6:e24112.

Schikora A, Garcia AV, Hirt H. (2012)
Plants as alternative hosts for Salmonella.

Trends Plant Sci. 17:245-9.

Montillet, J.-L., Leonhardt, N., Mondy, S., Tranchimand, S., Rumeau, D., Boudsocq, M., Garcia, A.V., Douki, T., Bigeard, J., Laurière, C., Chevalier, A., Castresana, C., Hirt, H. (2013)
An ABA-independent oxylipin pathway controls stomatal closure and immune defense in Arabidopsis.

PLoS Biol. 11(3):e1001513

Montillet, J-L., Hirt, H. (2013)
New checkpoints in stomatal defense.

Trends Plant Sci. 18(6):295-7.

Garcia AV, Charrier A, Schikora A, Bigeard J, Pateyron S, de Tauzia-Moreau ML, Evrard A, Mithöfer A, Martin-Magniette ML, Virlogeux-Payant I, Hirt H. (2013)
Salmonella enterica flagellin is recognized via FLS2 and activates PAMP-triggered immunity in Arabidopsis thaliana.

Cristina Andrés-Barrao, Feras F. Lafi,†, Intikhab Alam, Axel de Zélicourt, Abdul A. Eida, Ameerah Bokhari, Hanin Alzubaidy, Vladimir B. Bajic, Heribert Hirt and Maged M. Saad

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium

Abdul Aziz Eida, Maren Ziegler, Feras F. Lafi, Craig T. Michell, Christian R. Voolstra, Heribert Hirt, Maged M. Saad

Desert plant bacteria reveal host influence and beneficial plant growth properties

Yunhe Jiang , Baoda Han, Huoming Zhang, Kiruthiga G Mariappan, Jean Bigeard, Jean Colcombet & Heribert Hirt

MAP4K4 associates with BIK1 to regulate plant innate immunity

Corinna Banga, Tal Dagana, Peter Deinesb, Nicole Dubilierc, Wolfgang J. Duschld, Sebastian Frauneb, Ute Hentschele, Heribert Hirtf, Nils Hültera, Tim Lachnitb, Devani Picazoa, Lucia Pitae, Claudia Pogoreutzg, Nils Rädeckerg, Maged M. Saadf, Ruth A. Schmitza, Hinrich Schulenburgb, Christian R. Voolstrag, Nancy Weiland-Bräuera, Maren Zieglerg, Thomas C.G. Bosch

Metaorganisms in extreme environments: do microbes play a role in organismal adaptation?

Sajid Mahmood, IhsanullahDaur, SamirG.Al-Solaimani, ShakeelAhmad, Mohamed H.Madkour, MuhammadYasir, HeribertHirt, ShawkatAli  and ZahirAli

Plant Growth Promoting Rhizobacteriaand Silicon Synergistically Enhance Salinity Tolerance of Mung Bean

Ihsanullah Daur , Maged M. Saad, Abdul Aziz Eida, Shakeel Ahmad, Zahid Hussain Shah, Muhammad Z. Ihsan, Yasir Muhammad, Sayed S. Sohrab and
Heribert Hirt

Boosting Alfalfa (Medicago sativa L.) Production With Rhizobacteria From Various Plants in Saudi Arabia